import com.cloudgarden.layout.AnchorConstraint;
import com.cloudgarden.layout.AnchorLayout;
import java.awt.Point;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.InputMethodEvent;
import java.awt.event.InputMethodListener;
import java.io.File;

import javax.swing.BorderFactory;
import javax.swing.ButtonGroup;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JFileChooser;
import javax.swing.JLabel;
import javax.swing.JOptionPane;

import javax.swing.JFrame;
import javax.swing.JTable;
import javax.swing.JTextField;
import javax.swing.JTextPane;
import javax.swing.border.TitledBorder;
import javax.swing.table.DefaultTableModel;
import javax.swing.table.TableModel;
import javax.swing.JPanel;
import javax.swing.JProgressBar;
import javax.swing.JRadioButton;
import javax.swing.JScrollPane;
import java.util.Date;


/**
* This code was edited or generated using CloudGarden's Jigloo
* SWT/Swing GUI Builder, which is free for non-commercial
* use. If Jigloo is being used commercially (ie, by a corporation,
* company or business for any purpose whatever) then you
* should purchase a license for each developer using Jigloo.
* Please visit www.cloudgarden.com for details.
* Use of Jigloo implies acceptance of these licensing terms.
* A COMMERCIAL LICENSE HAS NOT BEEN PURCHASED FOR
* THIS MACHINE, SO JIGLOO OR THIS CODE CANNOT BE USED
* LEGALLY FOR ANY CORPORATE OR COMMERCIAL PURPOSE.
*/
@SuppressWarnings("serial")
public class Stammfenster extends javax.swing.JFrame {
	{
		//Set Look & Feel
		try 
		{
			javax.swing.UIManager.setLookAndFeel("com.sun.java.swing.plaf.windows.WindowsLookAndFeel");
		} 
		catch(Exception e) 
		{
			e.printStackTrace();
		}
	}

	String dat1 = "", dat2 = "", dat3 = "", dat1b = "", dat2b = "", dat3b = "", spikein = "";
	private JButton startbt;
	public static TableModel outputModel;
	private JPanel back;
	private JCheckBox backround;
	public static JProgressBar progress;
	private JButton openExp2;
	private JTextField dimension;
	private JPanel ttest;
	private JLabel labthreshold;
	public static JTextField fcstart;
	private JTable output;
	private JButton change;
	private JLabel lbstop;
	public static JTextField fcstop;
	private JLabel lbstart;
	private JLabel foldchange;
	private JCheckBox pvalueln;
	public static JTextField ttthreshold;
	private ButtonGroup cond;
	private JRadioButton pm_mm;
	private JRadioButton pm;
	private JPanel condens;
	private JTextPane datnames2;
	private JTextPane datnames1;
	private JScrollPane dat2Scroll;
	private JScrollPane dat1Scroll;
	private JScrollPane outputScoller;
	public static JTextPane loglist;
	private JScrollPane scrollSetup;
	private JLabel ubMin;
	private JLabel ubRange;
	private JLabel ubChipdim;
	private JTextField min;
	private JTextField range;
	private JButton dateinamenbt;

	public static void main(String[] args) {
		Stammfenster inst = new Stammfenster();
		inst.setVisible(true);
	}
	
	public Stammfenster() {
		super();
		// GUI erstellen
		initGUI();
	}
	
	private void initGUI() {
		try {
			{
				AnchorLayout thisLayout = new AnchorLayout();
				getContentPane().setLayout(thisLayout);
				this.setResizable(false);
				{
					ttest = new JPanel();
					AnchorLayout ttestLayout = new AnchorLayout();
					ttest.setLayout(ttestLayout);
					getContentPane().add(ttest, new AnchorConstraint(312, 253, 585, 10, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					ttest.setPreferredSize(new java.awt.Dimension(182, 126));
					ttest.setBorder(BorderFactory.createTitledBorder(null, "TTest", TitledBorder.LEADING, TitledBorder.TOP, new java.awt.Font("Tahoma",0,9)));
					{
						change = new JButton();
						ttest.add(change, new AnchorConstraint(615, 962, 837, 562, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						change.setText("change");
						change.setPreferredSize(new java.awt.Dimension(70, 28));
						change.setEnabled(false);
						change.addActionListener(new ActionListener() {
							public void actionPerformed(ActionEvent evt) {
								// Condition to Ttest
								Two_cond2ttest tt1 = new Two_cond2ttest(dat1, dat2, dat3, dat1b, dat2b, dat3b, "spikein.txt");
								//tt1.start(w3);
								tt1.start();
								Eval ev = new Eval("ttestoutBG_PM-MM10_11.txt");
								ev.start(tt1);
								
							}
						});
					}
					{
						lbstop = new JLabel();
						ttest.add(lbstop, new AnchorConstraint(773, 321, 940, 123, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						lbstop.setText("stop:");
						lbstop.setPreferredSize(new java.awt.Dimension(36, 21));
					}
					{
						fcstop = new JTextField();
						ttest.add(fcstop, new AnchorConstraint(781, 522, 948, 322, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						fcstop.setText("2.0");
						fcstop.setPreferredSize(new java.awt.Dimension(35, 21));
					}
					{
						lbstart = new JLabel();
						ttest.add(lbstart, new AnchorConstraint(559, 322, 726, 122, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						lbstart.setText("start:");
						lbstart.setPreferredSize(new java.awt.Dimension(35, 21));
					}
					{
						fcstart = new JTextField();
						ttest.add(fcstart, new AnchorConstraint(559, 522, 726, 322, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						fcstart.setText("0.5");
						fcstart.setPreferredSize(new java.awt.Dimension(35, 21));
					}
					{
						foldchange = new JLabel();
						ttest.add(foldchange, new AnchorConstraint(337, 722, 559, 82, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						foldchange.setText("Filter for foldchange:");
						foldchange.setPreferredSize(new java.awt.Dimension(112, 28));
					}
					{
						pvalueln = new JCheckBox();
						ttest.add(pvalueln, new AnchorConstraint(99, 922, 321, 642, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						pvalueln.setText("ln-p");
						pvalueln.setPreferredSize(new java.awt.Dimension(49, 28));
					}
					{
						labthreshold = new JLabel();
						ttest.add(labthreshold, new AnchorConstraint(99, 442, 321, 82, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						labthreshold.setText("Threshold:");
						labthreshold.setPreferredSize(new java.awt.Dimension(63, 28));
					}
					{
						ttthreshold = new JTextField();
						ttest.add(ttthreshold, new AnchorConstraint(130, 602, 297, 402, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						ttthreshold.setText("0.05");
						ttthreshold.setPreferredSize(new java.awt.Dimension(35, 21));
					}
				}
				{
					{
						cond = new ButtonGroup();
					}
					condens = new JPanel();
					AnchorLayout condensLayout = new AnchorLayout();
					condens.setLayout(condensLayout);
					getContentPane().add(condens, new AnchorConstraint(576, 253, 667, 10, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					condens.setPreferredSize(new java.awt.Dimension(182, 42));
					condens.setBorder(BorderFactory.createTitledBorder(null, "Condensation", TitledBorder.LEADING, TitledBorder.TOP, new java.awt.Font("Tahoma",0,9)));
					{
						pm = new JRadioButton();
						condens.add(pm, new AnchorConstraint(345, 482, 678, 122, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						cond.add(pm);
						pm.setText("pm");
						pm.setPreferredSize(new java.awt.Dimension(63, 14));
					}
					{
						pm_mm = new JRadioButton();
						condens.add(pm_mm, new AnchorConstraint(345, 882, 678, 522, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						pm_mm.setText("pm-mm");
						pm_mm.setSelected(true);
						cond.add(pm_mm);
						pm_mm.setPreferredSize(new java.awt.Dimension(63, 14));
					}
				}
				{
					dat2Scroll = new JScrollPane();
					getContentPane().add(dat2Scroll, new AnchorConstraint(198, 243, 288, 10, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					dat2Scroll.setPreferredSize(new java.awt.Dimension(175, 42));
					{
						datnames2 = new JTextPane();
						dat2Scroll.setViewportView(datnames2);
						datnames2.setForeground(new java.awt.Color(0,0,160));
						datnames2.setFont(new java.awt.Font("Tahoma",0,9));
						datnames2.setPreferredSize(new java.awt.Dimension(173, 40));
					}
				}
				{
					dat1Scroll = new JScrollPane();
					getContentPane().add(dat1Scroll, new AnchorConstraint(107, 243, 198, 10, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					dat1Scroll.setPreferredSize(new java.awt.Dimension(175, 42));
					{
						datnames1 = new JTextPane();
						dat1Scroll.setViewportView(datnames1);
						datnames1.setForeground(new java.awt.Color(0,128,0));
						datnames1.setFont(new java.awt.Font("Tahoma",0,9));
						datnames1.setPreferredSize(new java.awt.Dimension(173, 40));
					}
				}
				{
					outputScoller = new JScrollPane();
					getContentPane().add(outputScoller, new AnchorConstraint(16, 1000, 879, 262, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					outputScoller.setPreferredSize(new java.awt.Dimension(553, 399));
					outputScoller.setFocusTraversalPolicyProvider(true);
					outputScoller.setIgnoreRepaint(true);
					outputScoller.getVerticalScrollBar().setIgnoreRepaint(true);
					outputScoller.getHorizontalScrollBar().setIgnoreRepaint(true);
					{
						outputModel = new DefaultTableModel(
							new String[][] { { "", "", "", "", "", "", "" }},									
							new String[] { "gen", "conc1", "sigs1", "mw1", "sd1", "conc2", "sigs2", "mw2", "sd2", "fce", "fcc" ,  "p",  "lnp" });
						((DefaultTableModel) outputModel).setRowCount(1000);
						((DefaultTableModel) outputModel).setColumnCount(13);
						output = new JTable();
						outputScoller.setViewportView(output);
						output.setModel(outputModel);
						output.setSize(700, 16000);
						output.setFont(new java.awt.Font("Tahoma",0,9));
					}
				}
				{
					scrollSetup = new JScrollPane();
					getContentPane().add(scrollSetup, new AnchorConstraint(925, 1000, 1001, 262, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					scrollSetup.setPreferredSize(new java.awt.Dimension(553, 35));
					{
						loglist = new JTextPane();
						scrollSetup.setViewportView(loglist);
						loglist.setText("Setup...\n");
						loglist.setPreferredSize(new java.awt.Dimension(503, 33));
						loglist
							.setForeground(new java.awt.Color(128, 255, 128));
						loglist.setBackground(new java.awt.Color(0, 0, 0));
						loglist.setFont(new java.awt.Font("Tahoma", 0, 9));
						loglist.setAutoscrolls(true);
						loglist
							.addInputMethodListener(new InputMethodListener() {
							public void inputMethodTextChanged(
									//Automatisch nach unten scrollen
								InputMethodEvent evt) {
								Point point = new Point( 0, (int)(loglist.getSize().getHeight()) );
								scrollSetup.getViewport().setViewPosition( point );
							}
							public void caretPositionChanged(
								InputMethodEvent evt) {
							}
							});
					}
				}
				{
					back = new JPanel();
					AnchorLayout backgroundLayout = new AnchorLayout();
					back.setLayout(backgroundLayout);
					getContentPane().add(back, new AnchorConstraint(663, 167, 981, 10, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					back.setPreferredSize(new java.awt.Dimension(118, 147));
					back.setBorder(BorderFactory.createTitledBorder(null, "Background", TitledBorder.LEADING, TitledBorder.TOP));
					{
						backround = new JCheckBox();
						back.add(backround, new AnchorConstraint(193, 775, 336, 182, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						backround.setText("minimize");
						backround.setPreferredSize(new java.awt.Dimension(70, 21));
						backround.addActionListener(new ActionListener() {
							public void actionPerformed(ActionEvent evt) {
								if (backround.isSelected()) {
									dimension.setEditable(true);
									dimension.setEnabled(true);
									min.setEditable(true);
									min.setEnabled(true);
									range.setEditable(true);
									range.setEnabled(true);
								}
								if (!backround.isSelected())
								{
									dimension.setEditable(false);
									dimension.setEnabled(false);
									min.setEditable(false);
									min.setEnabled(false);
									range.setEditable(false);
									range.setEnabled(false);
								}
							}
						});
					}
					{
						dimension = new JTextField();
						back.add(dimension, new AnchorConstraint(384, 953, 527, 656, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						dimension.setPreferredSize(new java.awt.Dimension(35, 21));
						dimension.setToolTipText("Angabe über die Größe des Chips. Standardmäßig 740. Zu kleine Angaben können zu Fehlern führen.");
						dimension.setText("740");
						dimension.setEditable(false);
						dimension.setEnabled(false);
					}
					{
						range = new JTextField();
						back.add(range, new AnchorConstraint(527, 953, 670, 656, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						range.setPreferredSize(new java.awt.Dimension(35, 21));
						range.setToolTipText("Angabe über die Seitenlänge des zu bestimmenden Umfelds für die Reduzierung.");
						range.setText("30");
						range.setEditable(false);
						range.setEnabled(false);
					}
					{
						min = new JTextField();
						back.add(min, new AnchorConstraint(670, 953, 812, 656, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						min.setPreferredSize(new java.awt.Dimension(35, 21));
						min.setToolTipText("Anzahl der Minimalwerte die aus der Umgebungsmatrix gesucht werden. Einheit: Prozent.");
						min.setText("3");
						min.setEditable(false);
						min.setEnabled(false);
					}
					{
						ubChipdim = new JLabel();
						back.add(ubChipdim, new AnchorConstraint(384, 597, 527, 63, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						ubChipdim.setText("Dimension:");
						ubChipdim.setPreferredSize(new java.awt.Dimension(63, 21));
					}
					{
						ubRange = new JLabel();
						back.add(ubRange, new AnchorConstraint(527, 478, 670, 63, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						ubRange.setText("Range:");
						ubRange.setPreferredSize(new java.awt.Dimension(49, 21));
					}
					{
						ubMin = new JLabel();
						back.add(ubMin, new AnchorConstraint(670, 478, 812, 63, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
						ubMin.setText("Minvalue:");
						ubMin.setPreferredSize(new java.awt.Dimension(49, 21));
					}
				}
				{
					progress = new JProgressBar();
					getContentPane().add(progress, new AnchorConstraint(879, 1000, 925, 262, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					progress.setPreferredSize(new java.awt.Dimension(553, 21));
					progress.setStringPainted(true);
				}
				{
					openExp2 = new JButton();
					getContentPane().add(openExp2, new AnchorConstraint(16, 243, 91, 131, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					openExp2.setText("open EXP2");
					openExp2.setPreferredSize(new java.awt.Dimension(84, 35));
					openExp2.setForeground(new java.awt.Color(0,0,255));
					openExp2.addActionListener(new ActionListener() {
						public void actionPerformed(ActionEvent evt) 
						{
							JFrame frame1 = new JFrame();
							JFileChooser datei = new JFileChooser();
							spikein = "spikein.txt";
							File stpf = new File("E:/6.SEMESTER/ABM/ABM1/");
							datei.setCurrentDirectory(stpf);
							//	Dateinamen übernehmen
							datei.setMultiSelectionEnabled(true);
							datei.setFileSelectionMode(JFileChooser.FILES_ONLY);
								int result = datei.showOpenDialog(backround);
						        if (result == JFileChooser.APPROVE_OPTION) 
						        {
						            File[] file = datei.getSelectedFiles();
						            int ct = 1;
						            String name1 = "", name2 = "", name3 = "";
						            // get filepath
						            for(File path:file)
						            {
						            	if(ct == 1){dat1b = path.getName();}//path.getAbsolutePath();name1 = path.getName();}
						            	if(ct == 2){dat2b = path.getName();}//path.getAbsolutePath();name2 = path.getName();}
						            	if(ct == 3){dat3b = path.getName();}//path.getAbsolutePath();name3 = path.getName();}
						            	ct++;
						            }
						            if(dat3 != null)
						        	{
						            	loglist.setText(loglist.getText()+"got filenames from dialog 2: \n"+dat1b+"\n"+dat2b+"\n"+dat3b+"\n");
						            	datnames2.setText(dat1b+"\n"+dat2b+"\n"+dat3b);
						            	//loglist.setText(dat1+"\n"+dat2+"\n"+dat3);						        	
						        	}
						        }
						        else 
						        {
						        	loglist.setText(loglist.getText()+"open command canceled by user\n");
						        }
						}
					});
				}
				{
					dateinamenbt = new JButton();
					getContentPane().add(dateinamenbt, new AnchorConstraint(16, 122, 91, 10, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					dateinamenbt.setText("open EXP1");
					dateinamenbt.setPreferredSize(new java.awt.Dimension(84, 35));
					dateinamenbt.setForeground(new java.awt.Color(0,128,128));
					dateinamenbt.setFont(new java.awt.Font("Tahoma",0,11));
					dateinamenbt.addActionListener(new ActionListener() {
						public void actionPerformed(ActionEvent evt) 
						{
							JFrame frame1 = new JFrame();
							JFileChooser datei = new JFileChooser();
							spikein = "spikein.txt";
							//	Dateinamen übernehmen
							File stpf = new File("E:/6.SEMESTER/ABM/ABM1/");
							datei.setCurrentDirectory(stpf);
							datei.setMultiSelectionEnabled(true);
							datei.setFileSelectionMode(JFileChooser.FILES_ONLY);
								int result = datei.showOpenDialog(backround);
						        if (result == JFileChooser.APPROVE_OPTION) 
						        {
						            File[] file = datei.getSelectedFiles();
						            int ct = 1;
						            String name1 = "", name2 = "", name3 = "";
						            // get filepath
						            for(File path:file)
						            {
						            	if(ct == 1){dat1 = path.getName();}//path.getAbsolutePath();name1 = path.getName();}
						            	if(ct == 2){dat2 = path.getName();}//path.getAbsolutePath();name2 = path.getName();}
						            	if(ct == 3){dat3 = path.getName();}//path.getAbsolutePath();name3 = path.getName();}
						            	ct++;
						            }
						            if(dat3 != null)
						        	{
						            	loglist.setText(loglist.getText()+"got filenames from dialog 1: \n"+dat1+"\n"+dat2+"\n"+dat3+"\n");
						            	datnames1.setText(dat1+"\n"+dat2+"\n"+dat3);
						            	//loglist.setText(dat1+"\n"+dat2+"\n"+dat3);						        	
						        	}
						        }
						        else 
						        {
						        	loglist.setText(loglist.getText()+"open command canceled by user\n");
						        }
						}
					});
				}
				{
					startbt = new JButton();
					getContentPane().add(startbt, new AnchorConstraint(667, 253, 743, 168, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL, AnchorConstraint.ANCHOR_REL));
					startbt.setText("start");
					startbt.setPreferredSize(new java.awt.Dimension(63, 35));
					startbt.setFont(new java.awt.Font("Tahoma",1,11));
					startbt.addActionListener(new ActionListener() {
						@SuppressWarnings("deprecation")
						public void actionPerformed(ActionEvent evt) 
						{
							if(dat1 == "" || dat3 == "" || dat1b == "" || dat2b == "")
							{
								JOptionPane.showMessageDialog(back, "Not all files selected!");
							}
							else
							{
								loglist.setText(loglist.getText()+new Date()+": "+"start reading files...\n");
								progress.setValue(1);
								Wait w2 = new Wait();
									Haupt d1 = new Haupt(dat1);
									Haupt d2 = new Haupt(dat2);
									Haupt d3 = new Haupt(dat3);
									Haupt d1b = new Haupt(dat1b);
									Haupt d2b = new Haupt(dat2b);
									Haupt d3b = new Haupt(dat3b);
									d1.start();
									d2.start();
									d3.start(d1);
									d1b.start(d2);
									d2b.start(d3);
									d3b.start(d1b);
									// Warten bis alles fertig ist
									Wait w1 = new Wait();
									w1.start(d2b,d3b, "Ergebnisdateien erstellt!\nNext Step...");
							    // MinusBG falls aktiviert
									int bgg = 1; 
								if(backround.isSelected())
								{
									bgg = 1;
									double d = Double.parseDouble(dimension.getText()); 
									double r = Double.parseDouble(range.getText());
									double m = Double.parseDouble(min.getText());
									Minusbg m1 = new Minusbg(d,r,m,dat1);
									Minusbg m2 = new Minusbg(d,r,m,dat2);
									Minusbg m3 = new Minusbg(d,r,m,dat3);
									Minusbg m1b = new Minusbg(d,r,m,dat1b);
									Minusbg m2b = new Minusbg(d,r,m,dat2b);
									Minusbg m3b = new Minusbg(d,r,m,dat3b);
									// Übergabe  Thread, Parameterübergabe für Log
									m1.start(w1,0);
									m2.start(w1,0);
									m3.start(m1,0);
									m1b.start(m2,0);
									m2b.start(m3,0);
									m3b.start(m1b,0);
									// Warten auf die letzten Threads
									w2.start(m2b,m3b, "Minimierung abgeschlossen\nNext Step...");
								}
								else{progress.setValue(progress.getValue()+12);bgg = 2;}
							
								// Mrg2Sig	
							    int m2ss = 1;
							    // PM-MM bzw. PM
								if(pm_mm.isSelected()){m2ss = 1;}
								else{m2ss = 2;}
								Mrg2sig m2s1 = new Mrg2sig(dat1, m2ss, bgg);
								Mrg2sig m2s2 = new Mrg2sig(dat2, m2ss, bgg);
								Mrg2sig m2s3 = new Mrg2sig(dat3, m2ss, bgg);
								Mrg2sig m2s1b = new Mrg2sig(dat1b, m2ss, bgg);
								Mrg2sig m2s2b = new Mrg2sig(dat2b, m2ss, bgg);
								Mrg2sig m2s3b = new Mrg2sig(dat3b, m2ss, bgg);
								// Funktionsstart
								if(bgg == 1){m2s1.start(w2);m2s2.start(w2);}
								else if(bgg == 2){m2s1.start(w1); m2s2.start(w1);}
								m2s3.start(m2s1);
								m2s1b.start(m2s2);
								m2s2b.start(m2s3);
								m2s3b.start(m2s1b);
								// Warten
								Wait w3 = new Wait();
								w3.start(m2s2b,m2s3b, "Merge2Sig abgeschlossen\nNext Step...");
								
								// Condition to Ttest
								Two_cond2ttest tt1 = new Two_cond2ttest(dat1, dat2, dat3, dat1b, dat2b, dat3b, "spikein.txt");
								tt1.start(w3);
								//tt1.start();
								// Change Button aktivieren
								change.setEnabled(true);
								// Eval Ttest
								//Eval ev = new Eval("ttestout.txt");
								//ev.start(tt1);
							}
						}
					});
				}
			}
			this.setSize(771, 510);
		} catch (Exception e) {
			e.printStackTrace();
		}
	}
}